rs48416163 SNP Detail

Summary

• ID
  rs48416163
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:40830691 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGCATTGCA GTAAAATGTA
  GAATAAGAAT ACTAGGTAAA ATACACAATA TTGCTTACTA CAACTACAGT TGTAAAAGCA
  AGAGATGATC AGAAGTACTA TAACAAAGTG TGGACAAGAG GAGAATTCTT CCCACAGTTC
  TCACTTTAAA TGGAATAAAG GAAAATCCAC TGGAGAAAAA TACAGCAAAA TTAAATAGTA
  R
  ATTACTGACC CACCAAGCAG ATTCTGGGAA ATTACTCAAG GGTTCTATCC CATGTCATTC
  TGTTAAATAT TCTGGTGAGA AAAGCAGAAC ATAAAACAAA CTCTGCTCTC AAAAAAAACT
  CTGCTAGGAA CAATAGCCAG TGAAGCACAA CCACTTCTGG CCTCATTCAT TACAAGCCCC
  GCCCTCCACG CAATGAAATC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss145609447	ENSMUSSNP4139059	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs48416163					SNP	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:40830691 () rs orientation: forward

Symbol	Name	Function Class
Esp8	exocrine gland secreted peptide 8	222 bp upstream
Gm49847	predicted gene, 49847	357 bp downstream
Rr337560	regulatory region 337560	951 bp distal
Rr392616	regulatory region 392616	396 bp downstream
Tssr144637	transcription start site region 144637	219 bp upstream
Tssr144638	transcription start site region 144638	230 bp upstream