rs48417164 SNP Detail

Summary

• ID
  rs48417164
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:32608161 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGTG TCTGGCTAGC TGCCCGGCCT
  T
  CGAGCACTTG CATCCTGAGC GCCCC                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss136249703	ENSMUSSNP767370	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48417164					SNP	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:32608161 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21544	CpG island 21544	321 bp distal
Ets1	E26 avian leukemia oncogene 1, 5' domain	within coordinates
Rr206170	regulatory region 206170	within coordinates
Rr401307	regulatory region 401307	789 bp downstream
Tssr84270	transcription start site region 84270	1179 bp downstream
Tssr84271	transcription start site region 84271	1160 bp downstream
Tssr84272	transcription start site region 84272	1146 bp downstream
Tssr84273	transcription start site region 84273	1090 bp downstream
Tssr84274	transcription start site region 84274	1049 bp downstream
Tssr84275	transcription start site region 84275	770 bp downstream
Tssr84276	transcription start site region 84276	within coordinates
Tssr84277	transcription start site region 84277	121 bp upstream
Tssr84278	transcription start site region 84278	1062 bp upstream
Tssr84279	transcription start site region 84279	1382 bp upstream