rs48417667 SNP Detail

Summary

• ID
  rs48417667
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:46400199 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCACCAGCC AGCCGGTATT
  TCTTCGCAGA CTCTGCCCAC ACCAATCCTT CAGGCCTACC CTCCCCTTCT TTGTGTTTGG
  TTCACATAGA CAGAGGTGAC CCGGTATTTC AGAATGTTAT CGACACGAAA CATTACAGTC
  TGTTGGACAC ACAGCATGAT GTCACATCAT AAAGAAAGGC ACCACACACC AATGACCCAC
  R
  TGTCCCTGTT CTGAGAATTG AATCACCTCC AGCTTTGGAG CCTGGTACAC AGGCACCTCT
  GTGTGAAAAA CAGTGAATAG TCACTTGGCT CCTTCAGTTT GAACAGTAAT AAACTCTACA
  TATGCATTTT CCCTTGGCCA TCTCTGCAAT GTATATACCT TGGGTTATAT TAAAAATGTT
  TAAACTCAGA CAGGCATGGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss149179896	ENSMUSSNP5917816	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48417667					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:46400199 () rs orientation: forward

Symbol	Name	Function Class
D7Mit28	DNA segment, Chr 7, Massachusetts Institute of Technology 28	408 bp proximal
Gm74180	predicted gene, 74180	within coordinates
Rr380764	regulatory region 380764	1305 bp downstream
Saa2	serum amyloid A 2	1058 bp upstream
Tssr66700	transcription start site region 66700	1057 bp upstream
Tssr66701	transcription start site region 66701	1578 bp upstream