rs48417833 SNP Detail

Summary

• ID
  rs48417833
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:3285947 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTGACATC ACCCCGCACG
  TGCCTGCGCT GGCACCGCGT CGTCCTGGCG AGCGCCTCCT CGCGGCGGAA GGAGATCCTG
  GGGTTCGCTG TGCGAGACAT GTCGGCGGGG TTTCACGTGA GTGACACTTG GTCCCCACGG
  GATTGACAGC GACTAGCGGA GTGGCATGTG GACGTAGCTT CAGGTGAGTG ACCTGTTTTT
  K
  CCCAAGAGGC ACTGACAGAC AGGCCAGGGA CGGAGCCTGA GCGAGGGCTG GGAGTGGCTG
  AGCGTGAGTG ACAGGGGCCT GGGGCGGGGT CTTAACTAAG CTCCTGCAAG AGACATAGAT
  TTGCATGGGG TCTAAGTTTC ATTGCTGCTC GTTTGCATGA ATTTGAGTGA ATTTGAATGG
  CTGCTTGGTT TTGTTCTACC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	MOLF/EiJ
ss52277056	NES15359513	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	MOLF/EiJ
rs48417833					SNP	T	T	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52277056	NES15359513	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:3285947 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4353	CpG island 4353	within coordinates
Gm60416	predicted gene, 60416	within coordinates
Rab10os	RAB10, member RAS oncogene family, opposite strand	within coordinates
Rr265316	regulatory region 265316	within coordinates
Tssr112476	transcription start site region 112476	425 bp downstream
Tssr112477	transcription start site region 112477	146 bp downstream
Tssr112478	transcription start site region 112478	108 bp downstream
Tssr115578	transcription start site region 115578	650 bp upstream