rs48417937 SNP Detail

Summary

• ID
  rs48417937
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:24077996 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TATTCATGCC ATTCCCTTTA TCGACATCTC CCCCACCCTG
  CTCTCGTTTC CTGTCCCACT TCCCTTTCTT TTCCTCGATG TCTGGATCAC ATTGCAAACA
  K
  ATTAATTTTC ACCCTAGAAT CTTGTCTTAA GATAGGCTCA GGAAAGAACC AAGCTAAGGC
  ACAGAGGAAA GGGAAAGAGA AGGGGCTAGT TCAGAAAGC                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148072346	ENSMUSSNP859973	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48417937					SNP	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:24077996 () rs orientation: forward

Symbol	Name	Function Class
Gm9534	predicted gene 9534	within coordinates
Gm57318	predicted gene, 57318	within coordinates
Gm71416	predicted gene, 71416	1696 bp upstream
Rr608201	regulatory region 608201	1206 bp proximal
Rr608202	regulatory region 608202	1707 bp proximal
Tssr50297	transcription start site region 50297	1633 bp upstream