rs48418534 SNP Detail

Summary

• ID
  rs48418534
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:191572318 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTTACCATG CCTACCGATG
  GTGCCACCTG CTGGGTTCTC AGATTGGATG GTAGAGTCAT GGCCAAGGGT GTGGCCACCC
  TGGGGACCTT GCTGCTCTTG ACCATGGAAG ACTCCAGACG GCAAGCAGCA AGCCTGGAGA
  CCTGAAGTTG ACCCCACACT GTCTTTGGGG AGCACAGGCG GCTTCCATGG CAGAGAGAGA
  Y
  ACACATATGA CACCACCACA GGTTTGTTAG ATCACAAGGA ATTAACCACT CTGAAATGAG
  AAGTAGCCAT ACTTTCATAG CACGCCTGCA CCATGCTAAC CCATCCATTG TGTTGCAAAA
  AAGATTCCCC TGACAGTGAC AACTCAGACG AGTGAAGATG GGAGTGTGAA GCACTCACAA
  AATCCACATT CAACTGACTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60360490	NES15857430	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48418534					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60360490	NES15857430	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:191572318 () rs orientation: forward

Symbol	Name	Function Class
Rr426235	regulatory region 426235	69 bp distal
Rr426236	regulatory region 426236	162 bp distal
Rr426237	regulatory region 426237	304 bp proximal