rs48418920 SNP Detail

Summary

• ID
  rs48418920
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:24337662 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTCAGTAG CCGGGATTGC
  AGGCTTGTAC CACCGTGTTT GTCTCCTAGC CTTTCTCTTA AACTTTTTTT CTTCAGTCTC
  TTAACTGGAT CCTTCGGAAG CTACTTTCTG AGGCTCCTCC CCCTTTTGAC GTAGTCGTTG
  AGGCTTCAGT TTGAGCCCGG CTCTCCAGGC TGTTGCGTTT GTTAATCAGC CTGTTCTCGT
  Y
  GGACTGTATT CTTTGAAGCT CTTCTCTTTG ACCACACCAC CCTCCCTTCT CCGGTAGCTC
  TCTACCCACA GATCTGCCCT TTTTGAGATT CCCACCTGTT GACCCAGGCC AGACCATCCA
  GGTGTATCGT TCATTCAAAG CTCCGCCCAC CGGCCCTGGC TGCTCTGACC CCACCCCTTT
  TCCTCCGTAG TCCACGGGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60982645	NES16151002	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48418920					SNP	T	T	T	T	T	T	T	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60982645	NES16151002	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:24337662 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18554	CpG island 18554	852 bp distal
Cpgi18555	CpG island 18555	100 bp proximal
Cpgi18556	CpG island 18556	1792 bp proximal
Gm26550	predicted gene, 26550	321 bp upstream
Lypd3	Ly6/Plaur domain containing 3	within coordinates
Rr167239	regulatory region 167239	within coordinates
Tssr2135	transcription start site region 2135	1623 bp downstream
Tssr65017	transcription start site region 65017	1717 bp downstream
Tssr65018	transcription start site region 65018	1673 bp downstream
Tssr65019	transcription start site region 65019	1648 bp downstream
Tssr65020	transcription start site region 65020	539 bp upstream
Tssr65021	transcription start site region 65021	547 bp upstream
Tssr65022	transcription start site region 65022	1962 bp upstream