rs48419100 SNP Detail

Summary

• ID
  rs48419100
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:72535225 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGCTGTCG GGTAGGTGGG
  CTGGGCCCAT TGCTTTTCCC AGTGCAGAAC ACAGGTGGCC CTGCATGTGG TGACTTGGAA
  AATTGGGGTG CAGAAGCCCC AGTAATCCTG CCTGGCTCTT CAGGTTCTGG GCCCCAAGCC
  TGCTCTGAAG GAGGGTAACC CCGAGGAAGA CATTACAGCT GACCAGACCA ACGCCCAGGC
  Y
  GCAGCCCTGT ATAAGGTAGG CACTACAGGC CTGCTGGGGA TTGGCCTGGT GTGAGATCCT
  GCACAGAGCA TCTGCAGGTG GCCAGGGTAC AGAGCTGAAG GGAAGAGGCT GTGGGAAGGC
  TGGGCCAGGG CTCAGGTAGG TTTGTGGGGA CTGGAGGAGA GATGGTGGGA AGGACGCCCT
  CTGAGAAAGA GAATGGTATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss133285607	ENSMUSSNP5308288	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs48419100					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72535225 () rs orientation: forward

Symbol	Name	Function Class
Capg	capping actin protein, gelsolin like	within coordinates
Tssr57147	transcription start site region 57147	899 bp downstream
Tssr57148	transcription start site region 57148	431 bp upstream
Tssr57149	transcription start site region 57149	524 bp upstream
Tssr61469	transcription start site region 61469	427 bp upstream