rs48419675 SNP Detail

Summary

• ID
  rs48419675
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:66362562 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGGA GAGACCAGTC AGTGCCACCC
  C
  TAAGCCTTTT CCTGGCATCC CGATA                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss144494205	ENSMUSSNP882323	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	A/J
rs48419675					SNP	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:66362562 () rs orientation: forward

Symbol	Name	Function Class
Gm10558	predicted gene 10558	within coordinates
Map2	microtubule-associated protein 2	within coordinates
Rr412442	regulatory region 412442	1674 bp distal
Rr412443	regulatory region 412443	473 bp distal
Rr412444	regulatory region 412444	within coordinates
Tssr7142	transcription start site region 7142	1688 bp downstream
Tssr7143	transcription start site region 7143	1664 bp downstream
Tssr7144	transcription start site region 7144	1647 bp downstream
Tssr7145	transcription start site region 7145	1597 bp downstream
Tssr7146	transcription start site region 7146	1583 bp downstream
Tssr7147	transcription start site region 7147	1542 bp downstream
Tssr7148	transcription start site region 7148	1423 bp downstream
Tssr7149	transcription start site region 7149	1391 bp downstream
Tssr7150	transcription start site region 7150	1359 bp downstream
Tssr7151	transcription start site region 7151	1330 bp downstream
Tssr7152	transcription start site region 7152	1313 bp downstream
Tssr7153	transcription start site region 7153	1284 bp downstream
Tssr7154	transcription start site region 7154	544 bp upstream