rs48419738 SNP Detail

Summary

• ID
  rs48419738
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:90493615 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGAAGTTAT TATTTACTTA
  TTTATTAGTG GTGTGCTCTC AGGCAGCGAG AAAAGGGACC CCCTGGCTCC TACCTACCCA
  CTAGCCCCAG TGACCCCTGC TGCCAGTCAG CAGTCATAGA CGCTGGTAGG CACCTGGCGT
  GGGTGAGGTC TTGTGCTCAT GCAGAAATGA ACAAGACTCA GTATTCATCG GTGAGCTCAC
  Y
  GTGAGGCAGT GAGGGCAAGA GAAAGCAAGT AGGCAGCGAA TCTGCCTAAA TAGGAAGACG
  TTAAGACAGA AGGGAGGGCA CGAGGAGTGC TTCGTATGTG CCAGGGCAGG TAGAAACTGA
  CTCTAGCTGG GTTAGAGAAG GCCTTTTATG TGGCCTTCAA AGCATAGATG GGATCTCAGC
  AGAAGGAGAC GCCATGTGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60424330	NES15923773	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48419738					SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60424330	NES15923773	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:90493615 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13467	CpG island 13467	637 bp proximal
Rr854	regulatory region 854	within coordinates
Rr367471	regulatory region 367471	within coordinates
Rr580405	regulatory region 580405	1869 bp distal
Rr580406	regulatory region 580406	448 bp distal
Rr580407	regulatory region 580407	93 bp distal
Rr580408	regulatory region 580408	154 bp proximal
Rr580409	regulatory region 580409	655 bp proximal
Rr580410	regulatory region 580410	891 bp proximal
S100a3	S100 calcium binding protein A3	Intron
Tssr945	transcription start site region 945	967 bp upstream
Tssr30230	transcription start site region 30230	947 bp upstream