rs48419810 SNP Detail

Summary

• ID
  rs48419810
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:84823655 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAGTTTAGTG TGCTGTTTTC TACCTTTTGT AGTCTTTCTT
  AAAACAATAA ATACTGCTGT GATCTTTGTC TACTGATGAC GAGAGCAGGG TTAGGTGGGG
  Y
  GTGTGTGTGT AGTGGTGTAC TGAGGACAGA ACAGGACACC AGGCAGGTCA GAAATAAAGC
  ATTTAGTACA TGGAACAAGG CGAGGCCACC ACGGGGCTC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss145371900	ENSMUSSNP1943845	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss322747567	CHEV_8_86620925	CHEVERUD	SCREENING_POP	f	SNP		C	T
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs48419810					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:84823655 () rs orientation: forward

Symbol	Name	Function Class
Dcaf15	DDB1 and CUL4 associated factor 15	46 bp downstream
Gm39210	predicted gene, 39210	1014 bp upstream
Rfx1	regulatory factor X, 1 (influences HLA class II expression)	34 bp downstream