rs48419856 SNP Detail

Summary

• ID
  rs48419856
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:113172937 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGAA TCTAATCTGT GTTCTCTGGA
  R
  GAGCAGCCAG TGCTCTTTTC AGCCG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss145257051	ENSMUSSNP4531768	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs48419856					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:113172937 () rs orientation: forward

Symbol	Name	Function Class
Cdc20b	cell division cycle 20B	within coordinates
Cpgi6107	CpG island 6107	877 bp distal
Mir449a	microRNA 449a	1131 bp upstream
Mir449b	microRNA 449b	1016 bp upstream
Mir449c	microRNA 449c	312 bp downstream
Mirc34	microRNA cluster 34, including Mir449a through Mir449c	within coordinates
Rr486471	regulatory region 486471	1014 bp distal
Rr486472	regulatory region 486472	278 bp distal
Rr486473	regulatory region 486473	1844 bp proximal
Tssr121165	transcription start site region 121165	1172 bp downstream
Tssr121166	transcription start site region 121166	1207 bp upstream