rs48419973 SNP Detail

Summary

• ID
  rs48419973
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:117695577 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGAGGGAGCC AGAAGACCAG TACTACACTC CGTACTCCAG
  CCTTTGGAAC CACAACAAAA GCAATGCCTT CCCTCTTTGG AGATGTGTGT GTGTGGGGGG
  R
  TCATTTGACA ATCCCATTTT GGGAAGAGGA AAGTCACAAG TGCTAAAGGG CTCTGTGACC
  CTCCTCCCAG CATCAGTCTT GGGGGCTCAC ACTCAGCCC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss147294794	ENSMUSSNP2546	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs48419973					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117695577 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14668	CpG island 14668	1625 bp distal
Gm17114	predicted gene 17114	within coordinates
Slc6a9	solute carrier family 6 (neurotransmitter transporter, glycine), member 9	within coordinates