rs48420446 SNP Detail

Summary

• ID
  rs48420446
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:98153622 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAAGACTCTT TTTCTTCTTT TGCCCTCTTC TCAAAAATTG
  CACTGAGGAT TTGACAGTGT CCCTGATGGG CATTCTTGTG TAACTCTGAT TTCCCTCTTC
  Y
  TGTCTCTACT CTTTTCCTTT TTTTTTTTTT TAAACTTTAA TGCTCACTCA CTGACCCCCT
  CCCAGTCACT CCCTCCCACA ATCCTCTCCC CTGCCCCAC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148453772	ENSMUSSNP1384378	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss325078968	CHEV_15_98086172	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs48420446					SNP	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:98153622 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7649	CpG island 7649	1022 bp proximal
Gm62000	predicted gene, 62000	345 bp upstream
H1f7	H1.7 linker histone	245 bp downstream
Rr311340	regulatory region 311340	277 bp proximal
Rr391174	regulatory region 391174	1723 bp upstream
Tssr136230	transcription start site region 136230	1555 bp downstream
Tssr136231	transcription start site region 136231	1668 bp downstream