rs48420867 SNP Detail

Summary

• ID
  rs48420867
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:103060837 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGAAGAATT TGCAAGGGAG
  AAAATGACAT TATCAAGACC CTTTACAGCT TGCTTACCTG TATGTTTGGC TAAATTACAT
  GTTCAACAAA AGGGAAACAG GATTGATTAG TAGCTAATGA GCGTAAATAA GAAAAGGGGG
  AGAGCAATAC CAACAGCTTG TGCCATACTC ACTCACTTAC CAGGACAAGG CCGGGCCCTC
  W
  GCAGGTGAAT ATGACTTGAG ATCAATGGCT ATTTCTGTTG CCTCCTAGAT CACAAATGTC
  TCCTTTTACT TGTTCAGTGA ATGCCTTAAG CAGCTGTGTT TCATTTTGTT TTCAGTGAAA
  CCTTCTCCTT CGTGCTGACT GGAGAAGATG GAAGCCGGTG GTTTGGCTAC TGTAAGAAGC
  TTTTGGTGAG TTCCAGATTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60429932	NES15928614	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48420867					SNP	T	T	T	T	T	T	A	T	T	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60429932	NES15928614	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:103060837 () rs orientation: forward

Symbol	Name	Function Class
Dennd2c	DENN domain containing 2C	within coordinates
Rr64603	regulatory region 64603	164 bp proximal
Rr73687	regulatory region 73687	298 bp proximal