rs48420968 SNP Detail

Summary

• ID
  rs48420968
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:26298958 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GATGT TGCCTCCCTT CACGAGTGGA
  C
  TAAGTCTGTA CCAAGGGTCC CAGGC                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148869986	ENSMUSSNP6262739	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
ss322532353	CHEV_8_26919402	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48420968					SNP	C	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:26298958 () rs orientation: forward

Symbol	Name	Function Class
Rr189143	regulatory region 189143	159 bp distal
Rr366752	regulatory region 366752	394 bp downstream
Star	steroidogenic acute regulatory protein	within coordinates
Tssr76716	transcription start site region 76716	417 bp downstream
Tssr76717	transcription start site region 76717	269 bp downstream
Tssr76718	transcription start site region 76718	932 bp upstream
Tssr80732	transcription start site region 80732	680 bp upstream