rs48421375 SNP Detail

Summary

• ID
  rs48421375
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:72289548 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCAACCCT ATAGGTGGAA
  CAACATTATG AACTAACCAG TACCCCGGAG CTCTTGACTC TAGCTGCATA TGTATCAAAA
  GATGGCCTAG TTGGCCATCA CTGGAAAGAG AGGCCCATTG GACATGCAAA CTGTATATGC
  CCCAGTACAG GGGAACGCCA GGGCCAAAAA ATGGGAATGG GTGAGTAGGG AAGTGGGGGG
  R
  GGGTATGGGC GTCTTTTGGG ATAGCATTGG AAATGTAATT GAGGAAAATA TGTAATAAAA
  ATATTTTAAA AAAAGAAAGA AATGGCCTTT TGCCAGTTCT TGCCCATTCA TACCAGGTTA
  GTTTTTGTGA GTAGTGTCAA AGCCATTAAG AATTCACTTG TGAAATGGCC CTGCCAGATA
  CTACTTTTTC TTTTTGATAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss135302064	ENSMUSSNP405542	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss320797520	CHEV_3_72186137	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs48421375					SNP	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:72289548 () rs orientation: forward

Symbol	Name	Function Class
Rr578287	regulatory region 578287	1778 bp distal