rs48422626 SNP Detail

Summary

• ID
  rs48422626
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:70991115 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCCAGCTG CCATTCTAGG
  GTCCCTCATT TGCAGTCACA CTGACCTTGC CTGGTTTGCA AGGCTGAGAA GGGGGATGGC
  ATGTGGAGCA GTGGCTGCAG TTTTCAGGGT GCTCACTCCA GCCTACACTG AGCTGAGATG
  CCCCAGAGTG GCTCTTTATA AGCCTGAATG AAGTGTCATA CATCTCAGAA AGGACAGGGC
  R
  GAATCAAGAT GAACTGATCT GTGTATGCAT ATCCCTCTCT CTCTCTCTCT GCTCCCTCCC
  TTTCTCTCTC AGTCGTTCAT ATGAAAAATA TTGTCAAAGA GTACAGTTTT GTTGACTTAC
  TGTTTCATTC TTTTATAATT CCACGCACCT ACACTATGTT CTTTTATTAA AGCCTCCCAT
  TATCTCCTGT TAAGTCCCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss52651842	NES15472025	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G		A	G	G	A		G
ss324417497	CHEV_13_70981874	CHEVERUD	SCREENING_POP	f	SNP											A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs48422626					SNP	G	G	G	G	G	G	A	G	G	G	A	A	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52651842	NES15472025	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:70991115 () rs orientation: forward

Symbol	Name	Function Class
Adamts16	ADAM metallopeptidase with thrombospondin type 1 motif 16	1185 bp upstream
Cpgi5821	CpG island 5821	1156 bp distal
Gm36529	predicted gene, 36529	within coordinates
Rr482303	regulatory region 482303	1253 bp distal
Rr482304	regulatory region 482304	695 bp distal
Tssr123158	transcription start site region 123158	1280 bp upstream
Tssr123159	transcription start site region 123159	1242 bp upstream
Tssr123160	transcription start site region 123160	1213 bp upstream
Tssr123161	transcription start site region 123161	1186 bp upstream