rs48422772 SNP Detail

Summary

• ID
  rs48422772
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:51108373 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGAAA GTCAGGCCCC TTCTCTCCCT
  C
  TTGCTTCCTT TCATCCACCA TGAAA                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss139469932	ENSMUSSNP4564062	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss324619657	CHEV_14_51490591	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs48422772					SNP	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:51108373 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6408	CpG island 6408	428 bp distal
Gm26782	predicted gene, 26782	within coordinates
Rr404075	regulatory region 404075	101 bp downstream
Rr491714	regulatory region 491714	543 bp distal
Rr491715	regulatory region 491715	367 bp distal
Rr491716	regulatory region 491716	within coordinates
Rr491717	regulatory region 491717	565 bp proximal
Tep1	telomerase associated protein 1	356 bp upstream
Tssr125373	transcription start site region 125373	509 bp downstream
Tssr128379	transcription start site region 128379	1561 bp upstream
Tssr128380	transcription start site region 128380	366 bp upstream
Tssr128381	transcription start site region 128381	345 bp upstream