rs48423223 SNP Detail

Summary

• ID
  rs48423223
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:136805867 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TATAG AAAGGGACTT TGTTATGATG
  R
  CTTACGGTCT GTAGTCCACC TCCCC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss133848580	ENSMUSSNP6599305	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G
ss321998861	CHEV_6_136777390	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48423223					SNP	G	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:136805867 () rs orientation: forward

Symbol	Name	Function Class
BC049715	cDNA sequence BC049715	within coordinates
Cpgi18110	CpG island 18110	446 bp distal
Rr380176	regulatory region 380176	within coordinates
Rr640072	regulatory region 640072	647 bp distal
Rr640073	regulatory region 640073	16 bp distal
Rr640074	regulatory region 640074	within coordinates
Smco3	single-pass membrane protein with coiled-coil domains 3	1062 bp downstream
Tssr2044	transcription start site region 2044	389 bp downstream
Tssr59337	transcription start site region 59337	1109 bp downstream
Tssr59338	transcription start site region 59338	1071 bp downstream
Tssr59339	transcription start site region 59339	1058 bp downstream
Tssr59340	transcription start site region 59340	1030 bp downstream
Tssr59341	transcription start site region 59341	413 bp downstream
Tssr59342	transcription start site region 59342	44 bp downstream
Tssr63836	transcription start site region 63836	1125 bp upstream
Tssr63837	transcription start site region 63837	1108 bp upstream
Tssr63838	transcription start site region 63838	1100 bp upstream
Tssr63839	transcription start site region 63839	1044 bp upstream
Tssr63840	transcription start site region 63840	807 bp upstream
Tssr63841	transcription start site region 63841	690 bp upstream
Tssr63842	transcription start site region 63842	672 bp upstream
Wbp11	WW domain binding protein 11	653 bp upstream