rs48424021 SNP Detail

Summary

• ID
  rs48424021
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:113665708 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCATGGTGCT CTATCACCAT
  AGCAATAGAT ACCCAAACTA AGACATAAAT GTAATCTGTC TCAACTATCT TTACATTCTT
  TTTTATTCTC TACACAAACA GCATCAAAAT CCAAGAAAAT GGAAATATGG AAGCTGGAAT
  TTTAATTTGA CTTTTAAATA CACATCTAAA GAACCTCTTG CTCACCACCT TGTAAAGTCT
  R
  TTGCAGGATA GGAAGGTAGG AATTTATAGC CACAAATACA TATGATGGCT TCCTGAGAGA
  CAAGGGCCTC AAGGTACTAA CTGAACAAAC TTTTCCAAGA GCCAATATGC AAGTCTGGGT
  TTGGGGTGGC AAAAAAAAAA AAAACCAAAA CTTTTAAGTG AGTTTTTGAG AGTAGTAGAA
  TATGAAAATG TGCTCAAGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62041298	NES17144618	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48424021					SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62041298	NES17144618	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:113665708 () rs orientation: forward

Symbol	Name	Function Class
Gm34471	predicted gene, 34471	within coordinates
Gm34528	predicted gene, 34528	1973 bp upstream
Gm53817	predicted gene, 53817	within coordinates
Rr389105	regulatory region 389105	60 bp upstream