rs48424292 SNP Detail

Summary

• ID
  rs48424292
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:72570092 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGAGGTGCGG GAAGGCTGCG
  TGCCGCGCGG GGGTTCATCG TGGCGAGGGG TGGCCGGGGT GGGTAGCGGG GGTGGCGGGC
  GATCGGGGCC CGAATTTGGC CCCGCGCTCC GGAGCGGGGC AGGCGGTGAG GGGGAGATGG
  AGAGAGGCGC GCACGAGGCC TCTGCGGGAG CAGATTCCCC GCTTGCTCGC CTCGCTGCTC
  G
  GGGCCTTGGG CCTCCCCCGG GGGGCCTCCG GGGGCCTTTG GCTGCGGCCT GGGCGCGCTC
  GCTCACCCTC TCCGGGAGGG CCATGGCTTG GGTGGGGCGG CCTCCCGAGA CTCAGCATCC
  CGCTCCTGCC GCAGCGGGAG CCGACAGAAC TTAGCGACTT TGCCACTATG GCTTCCCGAG
  GGCCAGGGTT GGGAACGAAG                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss136623042	ENSMUSSNP5132028	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs48424292					SNP	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:72570092 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22018	CpG island 22018	within coordinates
Nedd4	neural precursor cell expressed, developmentally down-regulated 4	within coordinates
Rr682797	regulatory region 682797	318 bp distal
Tssr86018	transcription start site region 86018	798 bp downstream
Tssr86019	transcription start site region 86019	398 bp downstream
Tssr86020	transcription start site region 86020	342 bp downstream
Tssr86021	transcription start site region 86021	287 bp downstream
Tssr86022	transcription start site region 86022	945 bp upstream
Tssr90495	transcription start site region 90495	440 bp downstream
Tssr90496	transcription start site region 90496	476 bp downstream
Tssr90497	transcription start site region 90497	494 bp downstream