rs48424477 SNP Detail

Summary

• ID
  rs48424477
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:163900121 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGGT CCTATTTCTG TATGAAGGGG
  W
  ATGCATTGCC ACTGTCTTCT GGGAG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60338775	NES15834972	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	T	A	T	T	T		T	T	A	T		A
ss320085105	CHEV_1_166002683	CHEVERUD	SCREENING_POP	f	SNP										A					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs48424477					SNP	A	A	A	A	T	A	T	T	T	A	T	T	A	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60338775	NES15834972	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:163900121 () rs orientation: forward

Symbol	Name	Function Class
Gm57120	predicted gene, 57120	within coordinates
Rr396477	regulatory region 396477	1048 bp downstream
Rr396478	regulatory region 396478	57 bp downstream
Rr422140	regulatory region 422140	within coordinates
Rr422141	regulatory region 422141	696 bp proximal
Sell	selectin, lymphocyte	Intron