rs48424676 SNP Detail

Summary

• ID
  rs48424676
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:59651554 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATTTTGAGTT ACAGTTAGAC CCTTCCTTAA AAGGGTAACA
  AAAGTAATCA CAACACCAAA TCATTACTTA AGGCAAAGAT ATAGAAAGTT CAGAGGCCTT
  K
  AAAAGGAGAA AGCCTCATCA AAGAGATCTG ATTCAACTAA GAAAATATAG TGGGCCATAA
  TAAGCAGTTT TATAATAGTC ATTAACAGTA GCTGAGCCA                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss61014604	NES16116675	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	G	T	T	G	G	T	G		G	T	G	G
ss144685480	ENSMUSSNP7193019	ENSEMBL	ENSEMBL_Sanger	f	SNP		G							G
ss322224973	CHEV_7_67146692	CHEVERUD	SCREENING_POP	f	SNP												T					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs48424676					SNP	T	G	T	T	G	T	T	G	G	T	G	T	G	T	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61014604	NES16116675	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:59651554 () rs orientation: forward

Symbol	Name	Function Class
Del(7Ube3a-Snrpn)1Alb	Deletion, Chr 7, Beaudet 1	within coordinates
Gm38393	predicted gene, 38393	Intron
Gm72353	predicted gene, 72353	1858 bp upstream
Rr647544	regulatory region 647544	1368 bp proximal
Rr647545	regulatory region 647545	1869 bp proximal
Snrpn	small nuclear ribonucleoprotein N	Intron
Snurf	SNRPN upstream reading frame	Intron
Tssr66968	transcription start site region 66968	1883 bp upstream
Tssr72702	transcription start site region 72702	1177 bp downstream
Tssr72703	transcription start site region 72703	1255 bp downstream
Tssr72704	transcription start site region 72704	1332 bp downstream
Tssr72705	transcription start site region 72705	1358 bp downstream