rs48424979 SNP Detail

Summary

• ID
  rs48424979
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:144576793 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCCTCCCG TACCTTCTGT
  TAGTCACTTG AATGATTCAC AAGCTCCAGA GATTGCATAA CACCAGAGTG TGTCATCCAT
  CACTTCTGTG GTTAACACAA GCAGAAATAA TATCACCGTA TCATGGGGCC AGAGCTTGCG
  TGAGGTGGGC CTAAGTGCTC TGGCCAGGCA GTCCCTGGAC ACTGGGCCTA GCAAGGCCAA
  R
  ATCCTTTCCC TGAGACCATC TGTGCCTGTC CAAAAAGTGA CCCTTAGTTA CATAGTCACC
  TTTCATTTGG CTTTTGTTGT GGTTTGGTTT GAGGTTTGTT TTTTGTTTTT AACTATGCGT
  GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTCGGTGT GTCGGTGTGT
  CGGTGTAGGG TCTCATGGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60852892	NES15999183	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	G	G	G	G	G	G		G	G	G	G		G
ss321711311	CHEV_5_145400852	CHEVERUD	SCREENING_POP	f	SNP										G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs48424979					SNP	G	G	A	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60852892	NES15999183	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:144576793 () rs orientation: forward

Symbol	Name	Function Class
D5Dcr36	DNA Segment, Chr 5, Derry C. Roopenian 36	490 bp proximal
D5Mit43	DNA segment, Chr 5, Massachusetts Institute of Technology 43	445 bp proximal
D5Mit43.2	DNA segment, Chr 5, Massachusetts Institute of Technology 43.2	552 bp proximal
Gm71822	predicted gene, 71822	within coordinates
Rr624456	regulatory region 624456	1080 bp distal
Rr624457	regulatory region 624457	1135 bp distal