rs48425374 SNP Detail

Summary

• ID
  rs48425374
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:137638907 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGTC TGCAGATCAG GAACGTAAGC
  T
  AGGGGAGAGA TCTGGCGCCT TGGTG                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147625434	ENSMUSSNP4528586	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss321368867	CHEV_4_137467511	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs48425374					SNP	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137638907 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15141	CpG island 15141	1699 bp proximal
Ece1	endothelin converting enzyme 1	within coordinates
Rr602772	regulatory region 602772	1728 bp distal
Rr602773	regulatory region 602773	1557 bp distal
Rr602774	regulatory region 602774	667 bp distal
Rr602775	regulatory region 602775	757 bp distal
Rr602776	regulatory region 602776	1272 bp proximal
Tssr39791	transcription start site region 39791	1891 bp upstream
Tssr39792	transcription start site region 39792	1951 bp upstream