rs48425667 SNP Detail

Summary

• ID
  rs48425667
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:35389188 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATAAGACTG CTCGTTGTGC
  ATTCTGGCTT CAAGGACCTC TGAGCTATAG GAATCTCAGG TACAGCATGA CAGTGGTGGC
  TTCTACAGGG ATTTCTTGGA TGGTGGATAT AGTTTGGGGG TCTAGATGAT TTGCTTCATT
  AAGAAGGGAG CTCTCAGCCC TATTTGGGGC CCAATCAGCT GCATGCCCAC AAAGGGGATG
  W
  AATGGAGAAT CTGGCTGTGG GTTGACTCAA GGTTATGACC TGGTGGGCAC GGAGGGCATC
  CAGACTTCAC TGCAGGCTTC CAGGCTCAAT GGTGACATGA TCTGCTTTGG ATCTTTCAGG
  TGCCTGAAAA CCTCAGTTTC TCTTTCCTGC TTCAGTCAGG GCTGGCTCTG GGGCTAGCTG
  AAGTTGAGGC TGCAGATGCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60877193	NES15975916	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48425667					SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60877193	NES15975916	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:35389188 () rs orientation: forward

Symbol	Name	Function Class
Gm38789	predicted gene, 38789	551 bp upstream
Tssr55592	transcription start site region 55592	275 bp downstream