rs48427556 SNP Detail

Summary

• ID
  rs48427556
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:19230008 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATACAAAATA TATGGAATAC
  ATCAATGAGA CTCCAAAGAG AAAAAATTAA GAGACTAAGT AACTACATAA CAACAAACAA
  AGAAACAAAC AAAATACCTG CTCACCCCTA GAGGCATTGC AGGTGTGGCT ACTGTGTCAC
  ATGTGCATCA GTTGGTGGCA GAGGGGAGAG AGGTTATGTC TACACTCAGT GTTCAGACCA
  W
  CGAACATCTG AATGATGAGT ACCCTAACAA GCTCTAAGGG GAACAAAAGA AAGAGTACTT
  GAGATGACTA CCAGTTTGGT GCCAGGGTCC CCTACTGGGC TTCCAGGACA AAAAACAAAC
  CAGATATTAG AAGAACCCCC TTTTGAACTG GCTAAGAGTG ATCCCATAGC AGAGAACCCC
  TGTAAGTCAT CTTTCTGGAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63674911	NES17060058	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48427556					SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63674911	NES17060058	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:19230008 () rs orientation: forward

Symbol	Name	Function Class
Gm25762	predicted gene, 25762	within coordinates
Or2m13	olfactory receptor family 2 subfamily M member 13	within coordinates
Rr391422	regulatory region 391422	1561 bp upstream