rs48427871 SNP Detail

Summary

• ID
  rs48427871
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:40594441 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACCTGGAGA ATTGACTCCT
  GAGGAGAAAA TGTAGCGTGT TGTAATTAAT GCTTAAAGTT CATTTCTTGG TTGGCTTTGT
  TGCCTGCTAG CTGTATACTC ATTCTTAATT CATTAAGCCC TGTTTTTAAA TTTAATTACA
  GAAAAATATT TACTTCATTG TATGCAAATA TTTAGAATGG CTATGAATAG AGACAGAATG
  Y
  AATTGAGTCA GCAATGGATG ACACAAAGAT AGCGATTATG TACCTAAACA TAGTTGATGT
  AACTATTCAC AAATCACAAA TAAATTAAAA AAAAAAAGAA TTGAGAGATT TGCATTAGCA
  CCTAGAGGTG CATGGAAGAG GGTCTTTACC TCTAAGGTAC TGTTTATCAA AATAAGACAA
  ACAAAAACCG CCCCAAAACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60393038	NES15896181	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48427871					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60393038	NES15896181	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:40594441 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13108	CpG island 13108	308 bp proximal
Intu	inturned planar cell polarity protein	Intron
Rr397649	regulatory region 397649	318 bp upstream
Rr575837	regulatory region 575837	75 bp proximal
Rr575838	regulatory region 575838	1011 bp proximal
Tssr28955	transcription start site region 28955	459 bp upstream