rs48429630 SNP Detail

Summary

• ID
  rs48429630
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:136495251 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTAAC ACTTTGACAG AGTTTGAGGC
  Y
  GATAGATTTC AAATTCCAGA CCAGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss133840264	ENSMUSSNP1386568	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss321996253	CHEV_6_136466774	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs48429630					SNP	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:136495251 () rs orientation: forward

Symbol	Name	Function Class
Atf7ip	activating transcription factor 7 interacting protein	536 bp upstream
Cpgi18104	CpG island 18104	348 bp proximal
Gm44140	predicted gene, 44140	within coordinates
Rr133547	regulatory region 133547	150 bp proximal
Rr145858	regulatory region 145858	within coordinates
Rr400014	regulatory region 400014	315 bp upstream
Rr400015	regulatory region 400015	713 bp upstream
Tssr59315	transcription start site region 59315	533 bp upstream
Tssr59316	transcription start site region 59316	567 bp upstream
Tssr59317	transcription start site region 59317	613 bp upstream
Tssr63803	transcription start site region 63803	245 bp downstream
Tssr63804	transcription start site region 63804	508 bp downstream
Tssr63805	transcription start site region 63805	805 bp downstream