rs48429990 SNP Detail

Summary

• ID
  rs48429990
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:98940956 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGGCATAGGA TCTCCTGGAG CTGGAGTCAC CAGTGGTGTG
  AGCCACCCTG TCTGCGTGCT AGGAACGGAA CTCAGGTCTT CTAGAAGGCC TTGGACCAGT
  Y
  CTGACCACAG AGTCATCTCT TTGGCCCTTG GGTACATCTC TTTAAGTAAG ATGGGAAGTG
  CTTTGAAAGG CTTTCTCACC ACCAGATTTC TTCCTCTCT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148463657	ENSMUSSNP5277322	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48429990					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:98940956 () rs orientation: forward

Symbol	Name	Function Class
Gm41399	predicted gene, 41399	within coordinates
Gm62755	predicted gene, 62755	176 bp upstream
Rr509292	regulatory region 509292	1777 bp distal
Rr509293	regulatory region 509293	358 bp distal
Rr509294	regulatory region 509294	1123 bp proximal
Rr509295	regulatory region 509295	1315 bp proximal
Rr509296	regulatory region 509296	1689 bp proximal