rs48431832 SNP Detail

Summary

• ID
  rs48431832
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:54414364 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGGTTTGTG CCGTGACATC
  TAGGCAGAAC TGAAAAGTAA GGCGAGTGGG CTGAGGATGG GGCGGGGGAG CACAGAGGAC
  AGCCAGACTC CCAGGCGTCC TCATTCTGTT CAAGTGGCCA AACCATGGAA CCTTCTCTAG
  ACAGAGGACA GCCCCAGCTT TGTCACATTG ATGAGCTAGT CCTTGAGCAC TGCTCTTCAT
  M
  CCAGGGGAAC ATGGCTGCTC AGTTGACGCT GTGAGAGAGA CTGAGGATTC CGGTAGCTTA
  GACAGCTTCC CACCTCTCCA GGATTACCTG TGATGAAGCA ATAGACCTAT GTAACTTGTG
  AGTTGTGAGT TATCAGGGCA AGGGTTACAG AGATAGGTGC ATGGAAGCAA TATGGAAGAT
  TTGCAGGCTA CCCGCCCTTC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62393416	NES17236650	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48431832					SNP	C	C	C	C	C	C	C	C	C	C	C	C	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62393416	NES17236650	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:54414364 () rs orientation: forward

Symbol	Name	Function Class
A430107P09Rik	RIKEN cDNA A430107P09 gene	within coordinates
Rr492148	regulatory region 492148	168 bp distal
Tcra	T cell receptor alpha chain	within coordinates
Traj40	T cell receptor alpha joining 40	1014 bp upstream
Traj41	T cell receptor alpha joining 41	582 bp downstream
Traj42	T cell receptor alpha joining 42	1071 bp downstream
Tssr125565	transcription start site region 125565	1939 bp downstream
Tssr125566	transcription start site region 125566	925 bp downstream
Tssr125567	transcription start site region 125567	688 bp downstream
Tssr125568	transcription start site region 125568	671 bp downstream
Tssr125569	transcription start site region 125569	651 bp downstream
Tssr125570	transcription start site region 125570	622 bp downstream
Tssr128543	transcription start site region 128543	245 bp upstream