rs48432091 SNP Detail

Summary

• ID
  rs48432091
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:118663501 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTAGTTTA AAAAGTATAG
  AATGCTTGTG GGTGCCAAAT GTGCTTTCTT TCTTTCTCCC TAGTATGAAT TCAGTGTCAT
  CTTTGATACA AGCCACCTGT CTGGGGAAGA GGAAATTCTC AGCTTCATCG TGACTGCTCA
  GAGGTAAAAA GACTTAAACA GACTTTATTT TTCCAAAAAT AAAAATCATT ATGGGATGGG
  R
  AAAGGACATG ACTTGGGTGT CCCTGGGATG TAGAGGATTT GGAAATGGCT ACACAGTGAT
  AAATTCCCCA AAGCACTATA GGGATCAGTC TCTGTGGATG CTCATTAGGT CCTGCTCACT
  ACTGTGACCA AAGAAGAAAG CTCAAGGGAG GAAGGATTTG TGTTGGCTCA TGGATAAAGG
  GGATACAGTC CACCGGGCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss61228698	NES16859606	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs48432091					SNP	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61228698	NES16859606	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:118663501 () rs orientation: forward

Symbol	Name	Function Class
Itga9	integrin alpha 9	within coordinates
Rr207790	regulatory region 207790	1702 bp distal
Tssr87654	transcription start site region 87654	1059 bp upstream
Tssr87655	transcription start site region 87655	1088 bp upstream