rs48433194 SNP Detail

Summary

• ID
  rs48433194
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:84391557 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAATGGCAAT AATGCCTTCC CTTGGGCATC TCCCACCTGA
  GGGGAGCCCT CTCAGTTGGG GTCTGTTACC TCCCATTTGA GTGGACACTG CTGTGAACCC
  Y
  GGTTCCTTGT CTTTAGACAA TGAGGAGGGA GGGGGAGGGA GGCAGTGGGC TTTTGTGTCC
  ACACACCCTC TCTTGGATAT AGAGATTTTA CTCTGGGAG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss145359582	ENSMUSSNP591660	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss322745393	CHEV_8_86188827	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs48433194					SNP	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:84391557 () rs orientation: forward

Symbol	Name	Function Class
Gipc1	GIPC PDZ domain containing family, member 1	234 bp downstream
Pkn1	protein kinase N1	1608 bp downstream
Ptger1	prostaglandin E receptor 1 (subtype EP1)	1750 bp upstream
Rr666278	regulatory region 666278	within coordinates
Rr666279	regulatory region 666279	1260 bp proximal
Rr666280	regulatory region 666280	1761 bp proximal
Tssr78279	transcription start site region 78279	1706 bp upstream
Tssr78280	transcription start site region 78280	1779 bp upstream
Tssr78281	transcription start site region 78281	1899 bp upstream