rs48434122 SNP Detail

Summary

• ID
  rs48434122
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:48651556 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAGC ACTCGGGAGG CAGAGGCAGG
  A
  GGATTTCTGA GTTTGAGGCC AGCCT                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss133165775	ENSMUSSNP2989054	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs48434122					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:48651556 () rs orientation: forward

Symbol	Name	Function Class
Gimap9	GTPase, IMAP family member 9	1528 bp upstream
Gm46958	predicted gene, 46958	1210 bp downstream
Rr629719	regulatory region 629719	92 bp proximal
Rr629720	regulatory region 629720	1026 bp proximal
Tssr56160	transcription start site region 56160	177 bp upstream
Tssr56161	transcription start site region 56161	579 bp upstream
Tssr56162	transcription start site region 56162	1492 bp upstream
Tssr56163	transcription start site region 56163	1538 bp upstream
Tssr56164	transcription start site region 56164	1571 bp upstream
Tssr56165	transcription start site region 56165	1786 bp upstream