rs48434353 SNP Detail

Summary

• ID
  rs48434353
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:44390552 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCCCTCTG CCCCTGCCGG
  CCCCCTGGTC CAGCTTGGAG TTTCCTGTCC TCGCAGCTTT CCAAACTCCT TTCCCTTTCC
  GACCCTGGCC CCAGCGCCCC CTAGCCCCAC CTCTGTTGGT TCCCAAATTC CAAGTTCAGG
  TTGGAGGGGC CAGGTGGACT CCACAATCCT AGCGAGGCGC TGGTAAAGCC TCACTCTGCC
  S
  GCCGACCCAG AGACCTGCGG GGCGCCGGCC TGACTCCCGG CCTGGGCCCG CCCTGTCCCA
  GGACTCGGCT TCTGGCCACC AGGGAAGGTG GCTCTTGGGG TCTCCCGCTC CCGGAAGGAG
  GCGGTGCCGG GGACGTCGGC ACAGCTGGGC GGTAAGGTGG GTTCGGCAGA TGCCAGGCCC
  TAAGGCATAC TTCAAGGAGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss136396186	ENSMUSSNP7118790	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs48434353					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:44390552 () rs orientation: forward

Symbol	Name	Function Class
C030014I23Rik	RIKEN cDNA C030014I23 gene	within coordinates
Cpgi21659	CpG island 21659	521 bp distal
Cpgi21660	CpG island 21660	within coordinates
Cpgi21661	CpG island 21661	652 bp proximal
Gm10023	predicted gene 10023	within coordinates
Gm47204	predicted gene, 47204	within coordinates
Rr368728	regulatory region 368728	821 bp upstream
Tssr89164	transcription start site region 89164	469 bp downstream
Tssr89165	transcription start site region 89165	497 bp downstream