rs48434549 SNP Detail

Summary

• ID
  rs48434549
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:23473532 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TATATAGTAC AACTTGTGTA TAAATAAAGT AACAGTATCC
  TGCAGCTTTA CAGAAAAGGG TCAGATGTTA GTGCCTGATA ATGTAATTCG AAGAATTAAA
  W
  ACAAGGGAAA CCACATATAA TAAACCTGCT TTGCTCTGAC TTTCTACATA GGACCAAACC
  TTCACAGGTT AGAAAACTTT ATAGTAAACT ACTTCCTGAT                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	WSB/EiJ
ss52537068	NES15597625	PERLEGEN	MM_PANEL2	f	SNP	A	T	T	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	WSB/EiJ
rs48434549					SNP	A	T	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52537068	NES15597625	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:23473532 () rs orientation: forward

Symbol	Name	Function Class
Cdh18	cadherin 18	within coordinates
Cpgi6966	CpG island 6966	516 bp proximal
Gm56739	predicted gene, 56739	981 bp upstream
Tssr130794	transcription start site region 130794	1008 bp upstream