rs48435527 SNP Detail

Summary

• ID
  rs48435527
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:48408778 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCAG ACCCTTGTCT CCTTGGACTT
  T
  CTTAAAATGA GATAAAGCAG ACTGC                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss136455005	ENSMUSSNP3813782	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T
ss322954398	CHEV_9_48305583	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48435527					SNP	T	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:48408778 () rs orientation: forward

Symbol	Name	Function Class
1700121I08Rik	RIKEN cDNA 1700121I08 gene	1121 bp upstream
Cpgi21716	CpG island 21716	1458 bp distal
Gm5617	predicted gene 5617	1506 bp downstream
Gm70225	predicted gene, 70225	within coordinates
Rr195326	regulatory region 195326	578 bp distal
Rr206379	regulatory region 206379	977 bp distal
Rr401354	regulatory region 401354	1960 bp downstream
Tssr2862	transcription start site region 2862	1580 bp upstream
Tssr84994	transcription start site region 84994	1568 bp downstream