rs48435560 SNP Detail

Summary

• ID
  rs48435560
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:96093054 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTAGCCCTTG CCTCACTGGG GACTGGGTAG ATTTGTCTGA
  GTGTGAAAAC AGGGTAAATA AAACGCATGT GATCCCAGCA CTCGGGAGGC AGAGGCAGGC
  R
  GATTTCTGAG TTCGAGGCCA GCCTGGTCTA CAAAATGAGT TCCAGGACAG CCAGGGCTAC
  ACAGAGAAAC CCTGTCTCGG AAAAACCAAA AAAAAAAAA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss132675298	ENSMUSSNP1902333	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss323820148	CHEV_11_96063542	CHEVERUD	SCREENING_POP	f	SNP		G	A
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs48435560					SNP	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:96093054 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3625	CpG island 3625	1030 bp proximal
Gm11538	predicted gene 11538	1226 bp upstream
Gm30134	predicted gene, 30134	within coordinates
Gm56413	predicted gene, 56413	1917 bp upstream
Rr386513	regulatory region 386513	1470 bp downstream
Rr455321	regulatory region 455321	749 bp distal
Rr455322	regulatory region 455322	10 bp distal
Rr455323	regulatory region 455323	145 bp proximal
Rr455324	regulatory region 455324	624 bp proximal
Rr455325	regulatory region 455325	1229 bp proximal
Tssr104437	transcription start site region 104437	1213 bp upstream