rs48436562 SNP Detail

Summary

• ID
  rs48436562
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172036188 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAATGTTGA GGCAGGATTA
  TTCCCATCTT CGGCTACATA GTGATACCCT ATCCATAAAC AACAACAAAG GATGTTTCCT
  TATTTAGAAG CTTATTCGGG AGTTTGGTCC TTTCATGCTC CCATCTTGTA TATGTTTACT
  CCCACCTGAG CCTGTCCTGC GGAGTACGGG TGCGCACGAG TCCTTTTTAT AGAAGCCCAA
  Y
  AGATCTAAGT CTAGGGGATA CTCTTGGTTC CAATAGCAAT GCCCTCTCAT TACGACAACC
  ACTACACAGG CCAGATCCTC CCAAACTTAC TCTGATCAAA ACAGTTTCTG AAACGGGGTT
  CCTTGCCTCT GCTTTTACAT GACCCCTCCT CCCTAAGTCT ATCCTGGCTT TTGCTACCAG
  ATGAAATTTT GTCTTTCCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss120007403	PARCsnp_1.17780	PARC_SEQ	INBRED	f	SNP		T	C
ss120010307	PARCsnp_1.07421	PARC_SEQ	INBRED	f	SNP		T	C
ss146183905	ENSMUSSNP6625462	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		C
ss320123230	CHEV_1_174138752	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs48436562					SNP	C	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172036188 () rs orientation: forward

Symbol	Name	Function Class
Casq1	calsequestrin 1	1273 bp downstream
Cpgi1038	CpG island 1038	1668 bp distal
Gm17224	predicted gene 17224	within coordinates
Pea15a	proliferation and apoptosis adaptor protein 15A	1890 bp upstream
Rr396578	regulatory region 396578	1081 bp downstream
Rr423485	regulatory region 423485	1828 bp distal
Rr423486	regulatory region 423486	1327 bp distal
Tssr294	transcription start site region 294	1988 bp upstream
Tssr295	transcription start site region 295	1938 bp upstream
Tssr296	transcription start site region 296	1862 bp upstream
Tssr297	transcription start site region 297	1828 bp upstream
Tssr10179	transcription start site region 10179	1702 bp upstream
Tssr15164	transcription start site region 15164	1956 bp upstream
Tssr15165	transcription start site region 15165	1866 bp upstream
Tssr15166	transcription start site region 15166	1835 bp upstream
Tssr15167	transcription start site region 15167	915 bp upstream
Tssr15168	transcription start site region 15168	1485 bp downstream
Tssr15169	transcription start site region 15169	1572 bp downstream
Tssr15170	transcription start site region 15170	1599 bp downstream
Tssr15171	transcription start site region 15171	1613 bp downstream
Tssr15172	transcription start site region 15172	1695 bp downstream
Tssr15173	transcription start site region 15173	1787 bp downstream
Tssr15174	transcription start site region 15174	1839 bp downstream