rs48436779 SNP Detail

Summary

• ID
  rs48436779
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:55206024 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCAG GCTCTGTCCT CAGGGAACCT
  R
  GAATGCCACT CAGGCCAAAC TTGGT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss52723014	NES15567940	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A		G	A	A	A		A
ss139574351	ENSMUSSNP4536627	ENSEMBL	ENSEMBL_Sanger	f	SNP		A						A
ss324641232	CHEV_14_55587404	CHEVERUD	SCREENING_POP	f	SNP											A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs48436779					SNP	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52723014	NES15567940	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:55206024 () rs orientation: forward

Symbol	Name	Function Class
Mhrt	myosin heavy chain associated RNA transcript	191 bp upstream
Myh6	myosin, heavy polypeptide 6, cardiac muscle, alpha	1640 bp upstream
Rr407057	regulatory region 407057	784 bp distal
Rr492378	regulatory region 492378	1973 bp distal
Rr492379	regulatory region 492379	1436 bp distal
Rr492380	regulatory region 492380	within coordinates
Rr492381	regulatory region 492381	1094 bp proximal
Tssr4425	transcription start site region 4425	1917 bp upstream
Tssr125718	transcription start site region 125718	105 bp upstream
Tssr125719	transcription start site region 125719	184 bp upstream
Tssr125720	transcription start site region 125720	214 bp upstream
Tssr125721	transcription start site region 125721	234 bp upstream
Tssr125722	transcription start site region 125722	659 bp upstream
Tssr125723	transcription start site region 125723	728 bp upstream
Tssr125724	transcription start site region 125724	740 bp upstream
Tssr125725	transcription start site region 125725	1600 bp upstream
Tssr125726	transcription start site region 125726	1625 bp upstream
Tssr125727	transcription start site region 125727	1658 bp upstream
Tssr128742	transcription start site region 128742	1982 bp upstream
Tssr128743	transcription start site region 128743	1959 bp upstream
Tssr128744	transcription start site region 128744	1630 bp upstream
Tssr128745	transcription start site region 128745	1345 bp upstream
Tssr128746	transcription start site region 128746	592 bp upstream
Tssr128747	transcription start site region 128747	568 bp upstream
Tssr128748	transcription start site region 128748	524 bp upstream
Tssr128749	transcription start site region 128749	493 bp upstream
Tssr128750	transcription start site region 128750	471 bp upstream
Tssr128751	transcription start site region 128751	465 bp upstream
Tssr128752	transcription start site region 128752	406 bp upstream
Tssr128753	transcription start site region 128753	207 bp upstream
Tssr128754	transcription start site region 128754	137 bp upstream