rs48438060 SNP Detail

Summary

• ID
  rs48438060
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:83722067 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTCTGGGC TGCTGCTTGC
  TTCTTGGGTA AGACTATAGT AAATGCAGAA AAGATTCCCA CTTGTATGCT GTTTAAGACC
  ATTTCTAAGA CTAAATGGGT AGACTATTTA ACAATGTTGG ATACATCATG TGTGTGCTTT
  GCAAATTCTT TATCTATATG ATCTTGGTGT CTTTATAGTA GTGTCTTTGC CTTGTGAGTG
  W
  CTTAGTGTGT GTTGTTCATA TAACTTAAAA ACTTTGAGAC TGCTGCTAAC ATTGAAAACT
  GTGGCTGGAG TCGTAATCTT TGACAAGCAC GTCGTAATCA TGGTGAAACT CACACGTGGA
  TGCCGTGAGG CCAAACTGAG CTGCAGTTTA GGAGAAGGAC ATTGGGTAAA GGAGAGTGGA
  TAGTCTTAGT GATTAAGCAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61892674	NES17096053	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48438060					SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61892674	NES17096053	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:83722067 () rs orientation: forward

Symbol	Name	Function Class
Gm55122	predicted gene, 55122	within coordinates
Mef2c	myocyte enhancer factor 2C	within coordinates
Rr399	regulatory region 399	1699 bp distal
Rr1598	regulatory region 1598	within coordinates
Rr483252	regulatory region 483252	1832 bp distal
Rr483253	regulatory region 483253	316 bp distal
Rr483254	regulatory region 483254	within coordinates
Rr483255	regulatory region 483255	860 bp proximal
Tssr4132	transcription start site region 4132	1870 bp upstream
Tssr120502	transcription start site region 120502	1591 bp downstream
Tssr120503	transcription start site region 120503	1558 bp downstream
Tssr120504	transcription start site region 120504	1535 bp downstream
Tssr120505	transcription start site region 120505	345 bp downstream
Tssr120506	transcription start site region 120506	527 bp upstream
Tssr120507	transcription start site region 120507	1191 bp upstream
Tssr120508	transcription start site region 120508	1677 bp upstream
Tssr123327	transcription start site region 123327	1938 bp upstream
Tssr123328	transcription start site region 123328	1830 bp upstream
Tssr123329	transcription start site region 123329	1794 bp upstream
Tssr123330	transcription start site region 123330	1050 bp downstream
Tssr123331	transcription start site region 123331	1705 bp downstream