rs48438235 SNP Detail

Summary

• ID
  rs48438235
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:38799016 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGAGATGAT AACCAACTTC
  CGGACAGTGA CAGCCACATC AGGGTCCTGC TCCATCAGCA TGGAACGCAA CTCTTTCAGT
  TTTTTAATCT GTTAAGGCAA TCATTTGTAA GATTACAGAA ATTGTGGCAA AACATTCCAG
  AGCAAAAGAC AACAGCCAAA TTCACCTAGT GACTCAGACC CAGGTTGCAT TCAACTCCAA
  Y
  GGACACATCA CAAGAGTTAG ATGGAAACCA TATGTTTGTT ATGTGGGCAA GTACAAACTT
  TATTAAAAGT AAGTTAGAAG CTGGGCATAG TGGTGCACAC ACATCCAATT TCAGCACTCA
  CTTGGGAGGC AAAAGCAGGT GGATCTCTGT GAATTTGAGG CCAGCCTGGT CTACAGAGAG
  AGTTCCAGAA CAGCCAGGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63267090	NES17479310	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48438235					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63267090	NES17479310	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:38799016 () rs orientation: forward

Symbol	Name	Function Class
Noc3l	NOC3 like DNA replication regulator	within coordinates
Tssr159136	transcription start site region 159136	600 bp upstream