rs48439657 SNP Detail

Summary

• ID
  rs48439657
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:42456063 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCAACCATG CGCTGAATAA
  CCCCGCAGGC GGTTTCAGGG CGAAGCACAT GCTTTCTTTA AAATTTGTCA CTATTGACTT
  AAGGTTTCAT TTGGCAGGTT TTTGGCATCT TCAAACACTG TGAGCTCTAT TGCAGTTGTA
  TTCACCTGTC CTGGGAGGGG AGCCGGGATC ATTCCTGCCT GATTAAGGAA TTAGACAGTA
  M
  GGGCCACAGC TGGTTCTTTT CTCCTCCCAT CCTGTTTTTT GAGGGTCAGT GCCCTCTTTT
  TGTCTTTTCA TGACCCTAAG CAAAGAGAAA GGATGTCAAA AGGGTGAAAG CCCTGGAATG
  TGTCTGATCG TTTGGAATGA ACAAAATCGA GCAGATAAAC TGCGCGGCGA TGCTGTGTTG
  GGCCAGAGGG AGGTGTCAAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52629857	NES15518731	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48439657					SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52629857	NES15518731	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:42456063 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5505	CpG island 5505	581 bp distal
D13Mit138	DNA segment, Chr 13, Massachusetts Institute of Technology 138	1639 bp distal
Edn1	endothelin 1	within coordinates
Gm47118	predicted gene, 47118	within coordinates
Gm60910	predicted gene, 60910	910 bp upstream
Rr388326	regulatory region 388326	560 bp downstream
Rr478144	regulatory region 478144	1245 bp distal
Rr478145	regulatory region 478145	1818 bp distal
Rr478146	regulatory region 478146	1101 bp distal
Rr478147	regulatory region 478147	46 bp proximal
Rr478148	regulatory region 478148	1140 bp proximal
Tssr119437	transcription start site region 119437	1306 bp downstream
Tssr119438	transcription start site region 119438	1152 bp downstream
Tssr119439	transcription start site region 119439	1096 bp downstream
Tssr119440	transcription start site region 119440	1069 bp downstream
Tssr119441	transcription start site region 119441	961 bp downstream
Tssr119442	transcription start site region 119442	774 bp downstream
Tssr119443	transcription start site region 119443	753 bp downstream
Tssr119444	transcription start site region 119444	620 bp downstream