rs48439852 SNP Detail

Summary

• ID
  rs48439852
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:46384516 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGATTGGAC AGTGTATTTC
  CTACACATGG TGGGGTCTGT AGTGTTTGTA GATTAAAGAG CCACAGTGTT GATGATTATC
  TTGCATGACT GGATTTGAGA TCCCTTCGAA GGGGTTTCCA GTACACTCTT AAATTTTGGA
  GTCTGAAGTA CTTGTGAGTA GTTGGGTTTG GATTTGTCAG TACTTCAGGG GCGGTTGAAT
  K
  TTACAGAGTA GTTCTATCTC TCAGCCATTC CTTCACTTGG GCAATACAAA CCATTAATAA
  ACATCTGTCG CTCAGTGGTA GAATGCTTGC CCAACACATA TCCCAGCAGC ACCGGGAGTG
  GTGCTGGAAG CCTTTAATCC CACCTCTTTC GAGGCTAGTC TGGTTTACAG AGTTCCAGGA
  CAGCGAGGGG CTATAGAGAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60312993	NES15818221	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48439852					SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60312993	NES15818221	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:46384516 () rs orientation: forward

Symbol	Name	Function Class
Actr1a	ARP1 actin-related protein 1A, centractin alpha	336 bp upstream
Cpgi11001	CpG island 11001	175 bp distal
Cpgi11002	CpG island 11002	613 bp proximal
Gm59146	predicted gene, 59146	within coordinates
Rr405999	regulatory region 405999	737 bp downstream
Rr406000	regulatory region 406000	93 bp downstream
Rr406001	regulatory region 406001	549 bp upstream
Rr548727	regulatory region 548727	974 bp distal
Rr548728	regulatory region 548728	350 bp distal
Rr548729	regulatory region 548729	within coordinates
Rr548730	regulatory region 548730	329 bp proximal
Rr548731	regulatory region 548731	664 bp proximal
Rr548732	regulatory region 548732	772 bp proximal
Rr548733	regulatory region 548733	1484 bp proximal
Rr548734	regulatory region 548734	1526 bp proximal
Sufu	SUFU negative regulator of hedgehog signaling	819 bp upstream
Tssr156751	transcription start site region 156751	712 bp downstream
Tssr156752	transcription start site region 156752	684 bp downstream
Tssr156753	transcription start site region 156753	808 bp upstream
Tssr156754	transcription start site region 156754	932 bp upstream
Tssr159650	transcription start site region 159650	321 bp upstream