rs48439939 SNP Detail

Summary

• ID
  rs48439939
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:71439332 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCCA AATGGAAAAT GACAGTTTGG
  T
  AGAGGGGAGC CAGCTCGCTC GGGTG                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss146746977	ENSMUSSNP6968944	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss320339007	CHEV_2_71447045	CHEVERUD	SCREENING_POP	f	SNP		T	T
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs48439939					SNP	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:71439332 () rs orientation: forward

Symbol	Name	Function Class
Gm74658	predicted gene, 74658	within coordinates
Rr558782	regulatory region 558782	1463 bp distal
Rr558783	regulatory region 558783	within coordinates
Rr558784	regulatory region 558784	1807 bp proximal