rs48440452 SNP Detail

Summary

• ID
  rs48440452
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:110548149 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGGCGCGG TGCCCGCGTT
  CGCACCAGTC TCCACATGCT GCTCCGGCCT TCACAGAATT CTTGCATGGA TTAAGCTTCT
  GTTTTAGATG GGATAGCACG AGGAGATACA TCCTTAAACT TAGTGCTTTG TCTTCTTGTC
  CTCTCAGGGT GGCCAGTATT TTGACTTATT TATCCTGCTC AAAAGCTGCT TGAAATGTGT
  R
  CTGCTCTCTG AACAGTGGCG AGTCTTCTCT TGTCTCCAGC ATATATATAA CTCAGTGTTA
  CATGTCTTGA TGCATAAGAT AGGTTAAAAA AAAAGAAGAA GAAGAAAAAT GGGGCTTCTT
  TTAAAACCTG ATTTTAATCG TGGTCTCAGG GATCCGTGAA AAAGTTGTGA AATCAGACAT
  TGCTCTCTCG CGGCCTTGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss138691846	ENSMUSSNP5752232	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs48440452					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:110548149 () rs orientation: forward

Symbol	Name	Function Class
Ppp2r5c	protein phosphatase 2, regulatory subunit B', gamma	within coordinates
Rr387783	regulatory region 387783	1351 bp upstream