rs48440541 SNP Detail

Summary

• ID
  rs48440541
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:50583342 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAGCAGTTTA GATGGAGACA ATGAAGTCTC AGGTATGTGT
  CCCAGTCAGA TTTTTACTTC CAGGTCATAT GCCTCAAAAC TATTTTGTAT TACAAAGTTA
  T
  TCTTTGAAGT GTTTTGGTTT TGTTGTATTA GTATTGTGGA CTCCGTGGGC TATTTGTCCA
  TAACAGAGTT GGCATCGTAC TGAGCACAAG AGGGTAAGG                       
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss146533722	ENSMUSSNP1259140	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss320289768	CHEV_2_50548850	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs48440541					SNP	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:50583342 () rs orientation: forward

Symbol	Name	Function Class
Rr556759	regulatory region 556759	482 bp proximal
Rr556760	regulatory region 556760	1550 bp proximal