rs48440739 SNP Detail

Summary

• ID
  rs48440739
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:21425020 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGGT ACCTGATAAT GGGACCCTGC
  G
  CCCCCCAAAG GGATACTGAC CCAAG                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss137298229	ENSMUSSNP6628281	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G
ss323931439	CHEV_12_21380880	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48440739					SNP	G	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:21425020 () rs orientation: forward

Symbol	Name	Function Class
Adam17	a disintegrin and metallopeptidase domain 17	1387 bp upstream
Cpgi4477	CpG island 4477	812 bp distal
Gm49586	predicted gene, 49586	673 bp downstream
Rr463712	regulatory region 463712	1580 bp distal
Rr463713	regulatory region 463713	1336 bp distal
Rr463714	regulatory region 463714	1455 bp distal
Rr463715	regulatory region 463715	295 bp distal
Rr463716	regulatory region 463716	1275 bp distal
Rr463717	regulatory region 463717	787 bp distal
Tssr112932	transcription start site region 112932	1240 bp downstream
Tssr112933	transcription start site region 112933	762 bp downstream
Tssr115856	transcription start site region 115856	1527 bp upstream
Tssr115857	transcription start site region 115857	1501 bp upstream
Tssr115858	transcription start site region 115858	1473 bp upstream
Tssr115859	transcription start site region 115859	1427 bp upstream
Tssr115860	transcription start site region 115860	1402 bp upstream