rs48440882 SNP Detail

Summary

• ID
  rs48440882
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:45111789 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATAGCTCA TGCACAAAAG
  GACACACACG CGCGCGCGCG TGCGCGCAAA TGTAAAAAGT ATCCCACTCA ACCCACGATC
  CCAAAATGGG AAAACAAAAC AAAATGAAAA CAAAACAAAA CAAAACAAAA TAAAAAACCA
  AAAACCCGTG ATTAACATCT GGAAGTGGTA GCCCATAGCA GTAATCTCAG CACTTGAGAA
  R
  GTAAGACTGA AGACCACATG TTTGGACTAG TATGGGCTAC ATAGTAACTT CCAGACCAGG
  CTTGTATGCA TGACAGGGAG GACAAAGGCT CAGCCTGTAG GGTGCTTGCC TAGAGCGCAC
  AAGGCCTGGG GTCTGTCTAT CCCATTAGCT CCTACACTGA CATGTGGAAG CAGGAGCTCA
  AATGGTCAAG GGCATCTTCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss149135551	ENSMUSSNP3268389	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48440882					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:45111789 () rs orientation: forward

Symbol	Name	Function Class
Bax	BCL2-associated X protein	Intron
Gm73429	predicted gene, 73429	902 bp upstream
Gm73431	predicted gene, 73431	715 bp downstream
Rr380754	regulatory region 380754	933 bp downstream
Rr646450	regulatory region 646450	1991 bp distal
Rr646452	regulatory region 646452	1346 bp distal
Rr646453	regulatory region 646453	913 bp distal
Rr646454	regulatory region 646454	416 bp distal
Rr646455	regulatory region 646455	674 bp proximal
Tssr66542	transcription start site region 66542	1265 bp downstream
Tssr72399	transcription start site region 72399	1419 bp upstream
Tssr72400	transcription start site region 72400	1388 bp upstream